Riza Nugraha

Frontend Software Engineer

@TheHyveNL

August 12, 2015 | By Jojanneke Blaak 0

Our CEO, Kees van Bochove, was interviewed by DNAdigest about the aims and activities of The Hyve. Read the full interview on the website of DNAdigest as well as below: The Hyve is a 30 person open source bioinformatics services company from Utrecht, Netherlands, and Cambridge, MA, USA. Not so long ago, we invited them to […]

July 22, 2015 | By Kees van Bochove 0

  The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets. The code, which was developed at Memorial Sloan Kettering Cancer Center has recently been put into the public domain under a GNU Affero General Public License v3.0, and the Pistoia Alliance is exploring ways to build a sustainable community […]

June 22, 2015 | By Sjoerd van Hagen 0

To prepare for the yearly ND4BB Translocation meeting in Bremen in July, The Hyve hosted a workshop to discuss the next set of requirements for the ND4BB InfoCentre to be built for Translocation. Translocation is part of the IMI antimicrobial resistance (AMR) program New Drugs for Bad Bugs (ND4BB). The goal of Translocation is to find […]

June 22, 2015 | By Pieter Lukasse 2

The Hyve, together with Proventa International, organized its first Innovation Spotlight Session on Open Source Technologies for Precision Medicine. We were honored with a great attendance from industry and academia and were happy to see new ideas arise for new software implementations serving the translational research domain. The interest and support of pharma companies for open […]

June 10, 2015 | By Sjoerd van Hagen 0

During the TranSMART architectural workshop we have discussed the future of TranSMART from a developer perspective. We focussed on creating a solid but flexible, maintainable architecture on which we can build new features without losing too much time integrating them into the existing codebase. While this is necessary and highly valuable we cannot lose track […]

June 1, 2015 | By Pieter Lukasse 0

With a large audience and good attendance of our presentation on  Bioinf and SysBio in Practice: Industrial & Medical Applications (by Kees van Bochove)  and big interest in the special Birds of a Feather session on ADAM+Apache Spark and other new open source tools for large scale genomics data processing (by Pieter Lukasse), we can […]

May 28, 2015 | By Sjoerd van Hagen 0

On a nice spring evening Tim and I flew to Copenhagen to meet up with the people of Gritsystems. Together we form the technical heart of the implementation team of the ND4BB InfoCenter (a repository for preclinical and clinical data to facilitate antimicrobial research) in the Translocation project. The goal of this trip was to […]

May 4, 2015 | By Ward Weistra 0

The cBioPortal for Cancer Genomics is a well known, and well loved, interface for interactive analysis of cancer data. It has been developed, maintained and is also heavily used by the Memorial Sloan Kettering Cancer Center in New York. The public portal allows you to view the data from 89 cancer studies, including all studies from […]

April 17, 2015 | By Ward Weistra 2

New scientific discoveries increasingly rely on the integration of data from different types of experiments. The Hyve has extensive experience with using the open source tranSMART platform for the storage and analysis of this multi-omics data.

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April 17, 2015 | By Pieter Lukasse 0

On request of one of our clients we have recently evaluated the combination of ADAM and Apache Spark for processing of large scale genomics data. The steep increase in the amount of available genomics data triggers the need for tools that are able to store and handle large volumes of genomics data while ensuring necessary computational steps remain feasible within a reasonable amount of time. The combination of ADAM and Apache Spark showed to be successful.

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